A new vulnerability has been discovered on the git client. See Github’s announcement

Repositories hosted on github.com cannot contain any of the malicious trees that trigger the vulnerability because we now verify and block these trees on push.

The official announcement and the updated and fixed version of git is here.

We used to allow committing a path “.Git/config” with Git that is running on a case sensitive filesystem, but an attempt to check out such a path with Git that runs on a case insensitive filesystem would have clobbered “.git/config”, which is definitely not what the user would have expected. Git now prevents you from tracking a path with “.Git” (in any case combination) as a path component.

More information about the vulnerability here

Git maintains various meta-information for its repository in files in .git/ directory located at the root of the working tree. The system does not allow a file in that directory (e.g. .git/config) to be committed in the history of the project, or checked out to the working tree from the project. Otherwise, an unsuspecting user can run git pull from an innocuous-looking-but-malicious repository and have the meta-information in her repository overwritten, or executable hooks installed by the owner of that repository she pulled from (i.e. an attacker).